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30 October 2015

Idaho Sockeye Salmon and Global Warming: A Personal Perspective

Across much of the Pacific Northwest, the winter of 2014-2015 was quite dry and much of the area is still experiencing some level of drought. Except for coastal areas, this is a region of snowmelt dominated watersheds: After the snow melts, river flows fall dramatically and in drought conditions stable summer flows can be quite low indeed. Of course, this is also the home of tremendous populations of anadromous fish*, most notably various stocks of salmon and steelhead in the Columbia River. Because of the drought and warmer than normal water temperatures in the Columbia River system, there was much discussion over the effects of climate change on these fishes, most of which are listed as "Threatened" or even "Endangered" under the Endangered Species Act (ESA). One article in particular caught my attention as it was making its rounds in the Twitterverse because it was both of local interest and because I was asked what I thought about by someone I occasionally converse with on Twitter.

This article's byline was Boise, Idaho, and the species of interest was Sockeye Salmon (Oncorhynchus nerka). I'm not an expert on sockeye salmon or their habitat, but this is not a technical essay on sockeye per se, it's more of an opinion piece. But I do know that sockeye salmon have been nearly extinct in Idaho for decades, and have been considered functionally extinct. Presently, expensive captive broodstock and hatchery programs seem to be helping the Idaho's sockeye recover to a limited extent, but the landlocked form (kokanee) is most common in Idaho now.

I will start by stipulating that Columbia River and its tributaries experienced unusually warm water in 2015. I will also stipulate that water temperatures in the lower river have been gradually increasing; this is also true in Canada's Fraser River. A Seattle Times article in June claimed the river at Bonneville Dam (the farthest downstream) was hotter than it had been since 1950. In July, Snake River water temperature at Lower Granite Dam (the last passable major dam) was reported as 68°F** and few sockeye were passing through; some 50 were captured and transported by truck to the hatchery in Eagle, Idaho (see here). But is this situation a clear result of anthropogenic global warming (AGW)? Given that river temperatures may have been as high in the recent past, is this situation even unprecedented? Or could climate change, which has likely been occurring since the mid-1700s (even if exacerbated by human actions), be just one of many other better proved threats to anadromous fishes?

To start with, sockeye salmon were in a population decline in the 1950s or so, before the concept of AGW was conceived  and about the time adherents of climate change theory think anthropogenic CO2 emissions started to become an issue; this is some decades before AGW became widely accepted. Between 1937 and 1975, eight hydroelectric dams were built on the Columbia River and it's major tributary the Snake River, dramatically impairing most of Idaho's anadromous fish from reaching the Salmon River, one of the largest free flowing rivers in the continental United States. These dams mostly support some level of impaired fish passage, but many other parts of Idaho had their salmon runs extinguished as the Columbia River hydrosystem was developed***, sometimes by impressive structures like Hells Canyon Dam shown here.


But there are many full and partial barriers scattered throughout the system, and effects to anadromous fishes started before the first major hydroelectric dams were built. In fact, the ability of sockeye to acccess the upper Salmon River and the Sawtooth Valley was initially blocked by Sunbeam Dam in 1913, though this was probably not a complete barrier and was removed by 1934.

Sockeye (and kokanee) salmon have inhabited the Columbia River watershed since at least the Wisonsinian Glaciation about 14,000 years ago†. Sockeye were never really very abundant in Idaho compared with other salmon and with sockeye populations in Canada's Fraser River, probably because their habitat requirements are more restrictive than the more common Chinook salmon and steelhead because they typically require use of a lake. In Idaho, this combination is especially prevalent in the glacial lakes of the Sawtooth Mountains, particularly Redfish Lake where they are monitored, though they historically occurred in other areas (e.g., Payette Lake, where there were reports of commercial harvests of some 77,000 sockeye salmon in the 1870s); however, some lakes still retain the residualized kokanee form. More to the point, drought periods are common in the northern Rocky Mountains and Pacific Northwest and have occurred with some frequency during this 14,000 year period (see e.g. here and here). A similar drought situation to 2015's occurred in 1977 leading to trucking young salmon downstream around some major dams, a process that has been used frequently to help mitigate the threats faced by outmigrating smolts .Without directly comparing historic droughts, we can get an idea of how streamflow fluctuates regularly in the region with this graph of US Geological Survey data from Johnson Creek, a South Fork Salmon River†† tributary in west-central Idaho:


Overall, streamflow has been variable but relatively stable over time with some obvious low flow periods. The drought of 1977 is clearly visible, as is a similar period in 2001 and a sustained low flow period in the 1980s and 1990s.  In 1990, no sockeye salmon were observed at Redfish Lake in the Sawtooth Valley.

So drought is common and sockeye salmon populations have been declining to the point of extinction prior to 1990 when they may have, in fact, become functionally extinct as a natural population in Idaho. How does this relate to climate change? I produced a previous post from a U.S. Historical Climatology Network (USHCN) site on the Little Salmon River at New Meadows, Idaho, where raw temperature data suggested at most minimal warming over 120 years. For this post, I chose to look at temperature records from the USHCN site at Lewiston, Idaho, because it's near Lower Granite Dam. The raw data produce this plot:


This doesn't suggest warming, but in the interests of full disclosure, the SHAP adjusted data reverse the apparent stable to downward trend and show a possible upward trend. Data collected prior to 1947 were decreased, on average, by 2.08°F; from 1947 on, adjustments averaged 0.07°F, mostly upward. Here is the plot:


The reader can choose whether the data adjustments were appropriate and whether this indicates warming over the region, particularly in recent years. This graph shows adjusted data trends since 1979 (a commonly used start date because it starts the "satellite era") and since the "super El Nińo" year of 1998: Maybe slightly up since 1979, maybe down since 1998 but less variable.


In my opinion, climate and drought are stressors that would probably be irrelevant without the other threats to both adult fish and outmigrating juveniles. Adults coping with passage restrictions has already been discussed. Another major impact is water withdrawal, particularly for irrigation: several million acres of cropland are irrigated by impounded water. In addition, reducing streamflow and velocity through impoundment and diversion can increase water temperature irrespective of climate change. Native and non-native predators of juvenile salmon (pikeminnow, smallmouth bass, terns, etc.) have taken advantage of the altered watershed conditions. Sport and tribal fishing still impacts migrating adults. And, ironically, despite all the concern, 45 adult sockeye salmon returned to the Sawtooth Valley in 2015. While fewer than recent years, this is well above the 16 that returned between 1991 and 1998 and the zero return in 1990.

Most scientists realize that the earth has been warming since the Little Ice Age, and for resource management purposes, it's reasonable to assume that trend will continue even if CO2 is largely irrelevant. There is a clear legal requirement to attempt to recover ESA-listed species, and the program with sockeye salmon appears to be working to some extent. Irrespective of climate, however, the question is really whether recovering sockeye in the Salmon River is truly worth the effort; that is, whether people are willing to accept the costs. In a world without tradeoffs, I would like to see the species recover; however, reducing the threats over which people have control would be more directly helpful than worrying about the theoretical threat that is represented by AGW. Hydropower is often regarded as a renewable energy source because the turbines spin so long as the rivers flow. But the Columbia River demonstrates how large an ecological footprint renewable, momentum-based energy production can have. This is environmental destruction on a grand scale; a watershed that can never really be restored. There are movements afoot to remove the lower four Snake River dams, which would surely improve anadromous fish passage to the Salmon River; in fact, some studies have shown that wind and solar could (or already do) more than compensate for reduced power generation from removal of the four Snake River Dams below Lewiston. But others disagree and, in any case, removing those dams, and even others, cannot not restore the cumulative ecosystem damage that has occurred in five states and one Canadian province.

To sum up: The Columbia River has been heavily altered. Some dams may be removed to improve fish passage and efforts will certainly continue to increase anadromous fish numbers. But climate change is currently a theoretical threat in a sea of real, demonstrable threats; to recover species, the demonstrable threats should be addressed first.
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* Anadromous fishes spend most of their adult lives in the ocean but spawn and spend some juvenile time in rivers after hatching, then migrating downstream to the ocean.
** 68°F is a mandated threshold established by the National Marine Fisheries to ensure sufficiently cool temperatures during salmon migration.
*** A graphic of the major dams can be found here.
† Sockeye life history and population structure is complicated. I have used this paper to establish the Wisconsinian date.
†† Sockeye salmon likely did not regularly use this stream, but it has a complete flow record and should be approximately representative of Snake River tributaries in Idaho that did.

10 October 2015

Local Temperature Monitoring in West-Central Idaho: RAWS

This post follows, in part, the theme of my previous post: US Forest Service avoidance of local data in project analyses. For example, the Final Environmental Impact Assessment (FEIS) for a recent project that I was involved with as Forest Fishery Biologist (available here) contained this statement:
Climate data for the last 55 years (1951–2006) (The Nature Conservancy 2011) reveal that on average, temperatures in Idaho have increased 0.031 °F per year (Figure 1-2), and precipitation has increased 0.085% per year (Figure 1-3). Consistent with findings by Diaz and Eischeid (2007), the temperature increases have been more severe at higher elevations.**
The overview of the "Affected Environment" in this document talked generally about temperature requirements for native fishes, but did not expand upon local temperature trends. At the time, the Forest maintained a large water temperature monitoring network, and I tried to remedy lack of local temperature data to some extent in the Biological Assessment (BA)* for that project by including analysis of water temperature monitoring data in the project area; unfortunately, the general public generally does not routinely get to see BAs. The BA contained this statement about project area stream temperatures:
Stream temperatures within the analysis area are generally functioning appropriately and appear to be declining (Figure 19 and Appendix F).
and contained this graphic***:


My previous post on local temperatures from the New Meadows, Idaho, USHCN station suggested that the FEIS statement above might not be true for local temperatures (or might be essentially true if data adjustments and estimates were appropriate). This post examines additional local temperature data so that the reader can come to his or her own conclusions about that, and focuses on what should be the agency's obligation to look at local data beyond such generalized statements.

There is a network of remote automated weather stations (RAWS) scattered around the United States, established principally as interagency resources related to wildland fire management. I have suggested that the Forest could also use these data in addition to USHCN data to assess local trends. They have not, to the best of my knowledge done so, even though it's local, agency, and readily available information. So I look at some here.

I downloaded data for four sites on or very near the Payette National Forest from the Western Regional Climate Center (WRCC): Weiser River, at 5500 ft elevation; Ski Hill, at 5500 ft elevation; Tea Pot at 5152 ft elevation; and Snake River at 4100 ft elevation. These stations are located as shown in this Google Earth image:


Only the Ski Hill RAWS station has a photo as part of its metadata, shown here:


If the others are similar, they're in quite undeveloped settings. While temperature records are incomplete prior to 2001 or 2002, they appear to be raw (unadjusted) data. The Ski Hill site had one missing monthly average (February), which I estimated by averaging the other 12 points in the 13 year record. I averaged all twelve months for each year to generate annual mean temperatures. Here are the results:





All but one linear fit to these points (Tea Pot) are weakly negative. While I would not assert that these demonstrate decreasing temperature generally in this part of Idaho, they certainly refute any contention that temperatures, even at high elevation, are rapidly increasing; the most reasonable conclusion is that temperatures have been moostly stable over the past several years (much like the contentious "hiatus").

Whatever one takes away from this review, I think it should be obvious that project analyses for the Payette National Forest should use local data in its project assessments. Even if the increasing trend such as those shown for Idaho as a whole are correct, a proposed project needs to be evaluated in it's geospatial context as well.

UPDATE (04-15-2019): There are two Weiser River RAWS station graphics in the post; one of them should have been this one from the Snake River station:


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* BAs are bureaucratic documents describing potential effects to species protected under the Endangered Species Act during consultation with federal regulatory agencies (US Fish and Wildlife Service in this case). The analysis is typically more rigorous than for NEPA.
** This information and a graph were obtained from the Nature Conservancy site at  http://www.climatewizard.org/ for Idaho using the graph for last 50 years option.
*** MWMT is Maximum Weekly Maximum Temperature, a 7-day moving average of daily maximum water temperature (see here).

05 October 2015

Data Adjustment: Inspection of West-Central Idaho Temperatures

This is not a post about Climate Change being a hoax, nor is it a denial of Anthropogenic Global Warming (AGW), catastrophic or otherwise. It is also not a specific criticism of data adjustments; as a former data manager and analyst, I recognize that adjustments and estimations are sometimes appropriate. The appropriateness is the question, which I won't be able to definitively answer; however, the following may help readers draw their own conclusions.

New Meadows, Idaho, is a small, rural town in west-central Idaho. At about 4000 feet above mean sea level, it sits in a mountain meadow on the upper reaches of the Little Salmon River. It is also home, on the grounds of the US Forest Service's New Meadows Ranger Station, to a weather station that is a component of the U.S. Historical Climatology Network (USHCN, station 106388). This site has a monitoring record of more than 100 years and is available here. Since the Forest Service consistently insists in its project assessments under the National Environmental Policy Act (NEPA) that AGW is occurring and must consider potential interactions with it's projects*, this should be an important resource; however, it's data are rarely used in this context, relying on more generalized warming forecasts instead.

In fact, I had used the USHCN data in some assessments I produced when I worked on the Payette National Forest (PAF), and the data never appeared to support any particularly significant warming. After I retired I downloaded the data because I wanted to use it in a commentary on a proposed Forest project. What I found was surprising: It seemed to me that there was less raw data than I remembered, though there was a complete sequence of adjusted data. I admit here though that that assessment was a "rush job" and I may have mistaken adjusted data for raw data. That's water under the bridge now, but a recent post by Christopher Booker about global temperatures actually being in decline for the past three decades and not increasing caught my attention because there is so much talk of government agencies falsifying data (e.g., here). So I decided I'd like to look at these data again.

So what do the data look like? I've plotted the SHAP** adjusted record here:



So there's considerable annual variability with a minor positive trend and approximately 2°F increase in 120 years. Not particularly worrisome as one would really expect temperatures to be increasing after the low points of the Little Ice Age and, more recently, the relatively cool 1960s and 1970s.

But how does this record compare to the raw data record? In short, not well. Here I've overlain the two data sets on the same axes:



Now there seems to be reduced variability and a slightly downward trend of about 1°F over the 120 years. Well, less than 120 years because you can see that data before about 1905 don't seem to exist. So here's a few statistics***:



Interesting. I don't know enough about the station history to know whether the changes were appropriate. I know the station moved about a half mile with a Ranger Station move in the early 2000s, which I wouldn't expect to matter much because of the rural setting. Equally clearly, prior to 1979, the data values were reduced in the adjustments much more than they were after that. (I've not shown it here, but the few raw data points available before 1910 were reduced by about -3.5°F). Visually, the adjustments over time look like this:



There may be more information available in the station metadata that I have not yet examined, so this analysis is hardly exhaustive.  But this is a very small, rural town probably not subject much to UHI effects. It seems odd that all measurements prior to 1979 were all missing, erroneous, or 1.8°F too high on average; that is, that all data needed to be estimated or adjusted downward. There are raw precipitation data for two years prior to the start of the raw temperature record, but one of those clearly seems wrong, suggesting problems with the station's data generally prior to 1906; but why recorded temperatures would have been 3.5°F too high is unknown to me.

I confess to being skeptical that anything out of the ordinary, climate-wise, is happening; simple investigations like this fuel such skepticism. I also discount prognostications of dangerous effects of AGW, if they're happening, as inherently unscientific. Speculation is appropriate in science for generating theories and testable hypotheses subject to falsification. In other words, science is about evidence and demonstrable facts. It does concern me, however, that the adjustments in this data set serve primarily to make the past colder relative to the present. 

It also concerns me that the PAF assumes climate change is creating warmer temperatures when local data may not support that assumption. The PAF manages land in a relatively small area in west-central Idaho. Local conditions, not just theoretical global changes, need to be assessed on their own merits for potential project effects. 

Update (01-30-2019): The use of the abbreviation "SHAP" was incorrect. The SHAP homogenization method was version 1 and was replaced by the "version 2 "pairwise" homogenization algorithm," the adjustment reported here.




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* Federal law does require consideration of climate change and greenhouse gases in NEPA analyses.
** Data are adjusted for time of observation (TOBS) and station history (SHAP), which presumably effectively incorporates TOBS (see here).
*** Adjustment values are for no-zero adjustments; there were 4 adjusments that produced no change, all since 2009.